PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572831.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family E2F/DP
Protein Properties Length: 458aa    MW: 50767.4 Da    PI: 4.5011
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572831.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-27139204171
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  XP_012572831.1 139 RYDSSLGLLTKKFIHLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 204
                     6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-29137206IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-17139202IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.4E-35139204IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.8E-25141204IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.21E-48215321No hitNo description
SuperFamilySSF1440744.45E-34218321No hitNo description
PfamPF164212.3E-34220319IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSANRAPPAA SSSNPPDQIM QSMKRQLPFS SMKPPFVASG DYHRFGPNNR RNLDQETEAI  60
VVKTPQLKRK SETADFEADS GDRMTPESTE AANSPSQTPA SGKTGKAGKS SRLTKCNRSG  120
TQTPGSNIGN NLTPAGPCRY DSSLGLLTKK FIHLIKQAED GILDLNKAAD TLEVQKRRIY  180
DITNVLEGIG LIEKKLKNRI QWKGLDVSKP GEADDSFASL QAEVENLTIE ERRLDEQIRE  240
MQERLRELSE DENNEKLLFV TEEDIKNLPC FQNETLIAIK APHGTTLEVP DPDEAVDYPQ  300
RRYRIVLRST MGPIDVYLVS QFEEKFEEIN GVDVAPKFPS SPEVDKQQST LVPEDKGKEV  360
EVQGQDGEGP SSDFTNSHDF VSGIMKIVPS DVASDADYWL LSDADVSITD MWRTEPTVEW  420
NELNKLQEDY CTAPEHTTTP SHPSNIGEVS SASNPPDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-27134205274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0524550.0BT052455.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-O-10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572831.10.0PREDICTED: transcription factor E2FB isoform X2
SwissprotQ9FV711e-159E2FB_ARATH; Transcription factor E2FB
TrEMBLG7JH960.0G7JH96_MEDTR; E2F transcription factor
STRINGGLYMA11G18401.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.21e-160E2F transcription factor 1